Custom Made Image Processing

From Complex Data To Valuable Knowledge

Imactiv-3D can process complex 2D-3D images with state-of-the-art and custom-made algorithms for restoration, segmentation, classification, quantification and visualization.

From Data To Knowledge

Handling and analyzing large multidimensional biomedical imaging datasets can quickly turn into a very challenging subset of tasks, where both theoretical knowledge in mathematics and hardware computing resource become essential.

At Imactiv-3D, we provide an efficient framework to understand your need from a scientific perspective, thanks to a continuous relation with our experts in biology, microscopy and image processing. Our goal is to select, develop and implement the best methodology in order to issue fast, robust, high-confidence results.

3D Image Analysis Service

From sample conditioning and imaging to software development, each step can be tuned and adjusted on demand to best meet your requirements. Custom-based image processing algorithms are designed to perform specific jobs, including image restoration, segmentation and classification, based on approaches ranging from statistical modelling to deep learning.

This framework enables to:

  • reduce noise and blur
  • improve resolution
  • identify specific structures in complex environment
  • track down subsets of samples in a supervised or unsupervised manner.
Quantitative results, together with 3D innovative media for visualization or marketing applications, are delivered through an online, secure, user-friendly storage solution. Imaging and quantification results stored and sent using hard drives remains possible.


Our Image Processing Platform

Imaging characteristics 

  • Supporting any format, any quality, any resolution, any dimension.
    Imaging modalities
  • Images generated from in-house modalities: light sheet, wide-field, confocal, two-photon, structured illumination.
  • Images from other medical modalities: ultrasound, MRI, OCT, CT scan, LCOCT, in vivo confocal, etc.

Technological platform

  • High-performance workstations.
  • Computing software: Matlab®, Amira®, ImageJ, Python environment.
  • Secure online storage solutions.

Image processing in 2D or 3D

    Image enhancement
  • Efficient denoising, deconvolution, and other classical restoration tasks to improve image quality.
    Image analysis
  • Robust image processing pipelines with restoration, segmentation and classification algorithms to perform robust measurements or studies.


  • Quantitative analysis driven by your need (effect of a compound for instance), with development of specific numerical or qualitative criteria.
  • Innovative and state-of-the-art quantification methods best designed for your study.


  • All outputs available (graphs, images, films) to present your results in the best possible way.
  • Various models (surface, volume, or mixed) for 3D rendering.
  • Original and persuasive means to visualize your data.
Do you need to image your samples ? Our Imaging solutions

Some of our realization